pkg_elbowlib-package |
Evaluating foLd change By the lOgit Way |
analyze_elbow |
extracts all elbow statistics and plots and elbow curve. |
do_elbow |
calculates the upper and lower elbow cut-off fold-values |
do_elbow_rnaseq |
Calculates fold values from an MArrayLM object. |
EcoliMutMA |
Escherichia coli str. K-12 substr. MG1655 - EcoliMutMA (GSM576640-45 mutant - G3.2 mutant of E.coli EcNR1, no isobutanol) |
EcoliWT |
Escherichia coli str. K-12 substr. MG1655 - EcoliWT (GSM576634-39 WT - WT E.coli EcNR1, no isobutanol) |
elbowlib |
Evaluating foLd change By the lOgit Way |
elbow_variance |
calculates the variance for the upper and lower limits of an Elbow curve |
extract_working_sets |
extract the initial and final conditions from a table. |
get_elbow_limma |
Calculates fold values from an MArrayLM object. |
get_pvalue |
The calculated \logchi^2 p-value for the fit of the elbow curve to the model. |
GSE20986_design |
Comparative Gene Expression Profiling of HUVEC and Ocular Vascular Endothelial Cells (GEO database entry GSE20986) microarray design data file |
GSE20986_eset_exprs |
Comparative Gene Expression Profiling of HUVEC and Ocular Vascular Endothelial Cells (GEO database entry GSE20986) microarray data eset expression values - SUBSET |
null_variance |
determines the variance for a null Elbow curve |
pkg_elbowlib |
Evaluating foLd change By the lOgit Way |
plot_dataset |
plots data to see if it matches an elbow distribution. |
plot_elbow |
plots Elbow curve data. |
replicates_to_fold |
calculates fold values from a table of experimental data |
yeast_nbinomTest_results |
Pre-processed Yeast sample RNA-seq data |