Splice Interpreter Of Transcripts


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Documentation for package ‘SPLINTER’ version 1.0.0

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addEnsemblAnnotation addEnsemblAnnotation
callPrimer3 callPrimer3
checkPrimer checkPrimer
compatible_cds compatible_cds
compatible_tx compatible_tx
eventOutcomeCompare eventOutcomeCompare
eventOutcomeTranslate eventOutcomeTranslate
eventPlot eventPlot
extendROI extendROI
extractSpliceEvents extractSpliceEvents
extractSpliceSites extractSpliceSites
findCompatibleEvents findCompatibleEvents
findCompatibleExon findCompatibleExon
findTX findTX
getPCRsizes getPCRsizes
getRegionDNA getRegionDNA
insertRegion insertRegion
makeROI makeROI
makeUniqueIDs makeUniqueIDs
pcr_result1 pcr_result1
plot_seqlogo plotting sequence logo
primers primers
psiPlot psiPlot
region_minus_exon region_minus_exon
removeRegion removeRegion
roi roi
splice_data splice_data
splice_fasta splice_fasta
splitPCRhit splitPCRhit
thecds thecds
theexons theexons
valid_cds valid_cds
valid_tx valid_tx