BiocParallel
DOI:
10.18129/B9.bioc.BiocParallel
This package is for version 3.8 of Bioconductor;
for the stable, up-to-date release version, see
BiocParallel.
Bioconductor facilities for parallel evaluation
Bioconductor version: 3.8
This package provides modified versions and novel implementation of functions for parallel evaluation, tailored to use with Bioconductor objects.
Author: Bioconductor Package Maintainer [cre], Martin Morgan [aut], Valerie Obenchain [aut], Michel Lang [aut], Ryan Thompson [aut], Nitesh Turaga [aut]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("BiocParallel")
):
Installation
To install this package, start R (version
"3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocParallel")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("BiocParallel")
Details
biocViews |
Infrastructure, Software |
Version |
1.16.6 |
In Bioconductor since |
BioC 2.13 (R-3.0) (5.5 years) |
License |
GPL-2 | GPL-3 |
Depends |
methods |
Imports |
stats, utils, futile.logger, parallel, snow |
LinkingTo |
BH |
Suggests |
BiocGenerics, tools, foreach, BatchJobs, BBmisc, doParallel, Rmpi, GenomicRanges, RNAseqData.HNRNPC.bam.chr14, TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation, Rsamtools, GenomicAlignments, ShortRead, codetools, RUnit, BiocStyle, knitr, batchtools, data.table |
SystemRequirements |
C++11 |
Enhances |
|
URL |
https://github.com/Bioconductor/BiocParallel |
BugReports |
https://github.com/Bioconductor/BiocParallel/issues |
Depends On Me |
bacon, BEclear, BiocNeighbors, Cardinal, ClassifyR, clusterSeq, consensusSeekeR, CopywriteR, csaw, cydar, DelayedArray, DEXSeq, DMCHMM, doppelgangR, DropletUtils, GenomicFiles, hiReadsProcessor, INSPEcT, MBASED, metagene, Oscope, OUTRIDER, PCAN, pRoloc, rnaseqGene, Rqc, scater, scran, sequencing, ShortRead, SigCheck, simpleSingleCell, STROMA4, SummarizedBenchmark, sva, xcms |
Imports Me |
abseqR, AffiXcan, ALDEx2, amplican, ASICS, bayNorm, BioCor, BioNetStat, biotmle, bsseq, CAGEfightR, CAGEr, CAMTHC, cellbaseR, ChIPexoQual, ChIPQC, chromswitch, chromVAR, CoGAPS, consensusDE, contiBAIT, coseq, cpvSNP, CRISPRseek, CrispRVariants, dcGSA, DEComplexDisease, DelayedMatrixStats, derfinder, DEScan2, DESeq2, DEsingle, DiffBind, dmrseq, DOSE, DRIMSeq, easyRNASeq, EMDomics, erma, ERSSA, fgsea, FindMyFriends, flowcatchR, GDCRNATools, GenoGAM, GenomicAlignments, genotypeeval, gmapR, GSEABenchmarkeR, GUIDEseq, h5vc, HiCcompare, HTSeqGenie, HTSFilter, iasva, icetea, ideal, IHWpaper, IMAS, ImpulseDE2, InPAS, IntEREst, IONiseR, IPO, IVAS, JunctionSeq, KinSwingR, LineagePulse, loci2path, LowMACA, MACPET, MCbiclust, metabomxtr, MethylAid, methylInheritance, methyvim, MetNet, MIGSA, minfi, motifbreakR, MPRAnalyze, MSnbase, multiHiCcompare, NBSplice, Pbase, pbcmc, PowerExplorer, proFIA, QDNAseq, qpgraph, qsea, QuasR, recount, REMP, RJMCMCNucleosomes, Rsamtools, RUVcorr, scDD, scde, SCnorm, scone, scoreInvHap, scruff, sigFeature, singscore, SNPhood, soGGi, splatter, SplicingGraphs, srnadiff, TarSeqQC, TFBSTools, TMixClust, trena, Trendy, TSRchitect, TVTB, TxRegInfra, VariantFiltering, VariantTools, zinbwave |
Suggests Me |
chimera, curatedMetagenomicData, HDF5Array, MethylAidData, netSmooth, omicsPrint, PureCN, RcisTarget, SeqArray, systemPipeR, TENxBrainData, TENxPBMCData, TFutils, tofsims, universalmotif |
Links To Me |
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Build Report |
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Package Archives
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Installation instructions to use this
package in your R session.