consensusSeekeR-package |
consensusSeekeR: Detection of consensus peak regions inside a group of experiments using narrowPeak files |
A549_CTCF_MYJ_NarrowPeaks_partial |
Sites with the greatest evidence of transcription factor binding for the CTCF transcription factor (for demonstration purpose) |
A549_CTCF_MYJ_Peaks_partial |
Sites with the greatest evidence of transcription factor binding for the CTCF transcription factor (for demonstration purpose) |
A549_CTCF_MYN_NarrowPeaks_partial |
Sites with the greatest evidence of transcription factor binding for the CTCF transcription factor (for demonstration purpose) |
A549_CTCF_MYN_Peaks_partial |
Sites with the greatest evidence of transcription factor binding for the CTCF transcription factor (for demonstration purpose) |
A549_FOSL2_01_NarrowPeaks_partial |
Genomic regions with the greatest evidence of transcription factor binding for the FOSL2 transcription factor (for demonstration purpose) |
A549_FOSL2_01_Peaks_partial |
Sites with the greatest evidence of transcription factor binding for the FOSL2 transcription factor (for demonstration purpose) |
A549_FOXA1_01_NarrowPeaks_partial |
Genomic regions with the greatest evidence of transcription factor binding for the FOXA1 transcription factor (for demonstration purpose) |
A549_FOXA1_01_Peaks_partial |
Sites with the greatest evidence of transcription factor binding for the FOXA1 transcription factor (for demonstration purpose) |
A549_NR3C1_CFQ_NarrowPeaks_partial |
Ranges with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFQ). For demonstration purpose. |
A549_NR3C1_CFQ_Peaks_partial |
Sites with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFQ). For demonstration purpose. |
A549_NR3C1_CFR_NarrowPeaks_partial |
Ranges with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFR). For demonstration purpose. |
A549_NR3C1_CFR_Peaks_partial |
Sites with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFR). For demonstration purpose. |
A549_NR3C1_CFS_NarrowPeaks_partial |
Ranges with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFS). For demonstration purpose. |
A549_NR3C1_CFS_Peaks_partial |
Sites with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFS). For demonstration purpose. |
consensusSeekeR |
consensusSeekeR: Detection of consensus peak regions inside a group of experiments using narrowPeak files |
findConsensusPeakRegions |
Extract regions sharing features in more than one experiment |
NOrMAL_nucleosome_positions |
Nucleosome positions detected by the NOrMAL software using syntetic reads generated using a normal distribution. For demonstration purpose. |
NOrMAL_nucleosome_ranges |
Ranges associated to nucleosomes detected by the NOrMAL software using syntetic reads generated using a normal distribution. For demonstration purpose. |
NucPosSimulator_nucleosome_positions |
Nucleosome positions detected by the NucPosSimulator software using syntetic reads generated using a normal distribution. For demonstration purpose. |
NucPosSimulator_nucleosome_ranges |
Ranges associated to nucleosomes detected by the NucPosSimulator software using syntetic reads generated using a normal distribution. For demonstration purpose. |
PING_nucleosome_positions |
Nucleosome positions detected by the PING software using syntetic reads generated using a normal distribution. For demonstration purpose. |
PING_nucleosome_ranges |
Ranges associated to nucleosomes detected by the PING software using syntetic reads generated using a normal distribution. For demonstration purpose. |
readNarrowPeakFile |
Extract narrow regions and peaks from a narrrowPeak file |