XDE

DOI: 10.18129/B9.bioc.XDE  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see XDE.

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: 3.17

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("XDE")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XDE")

 

PDF R Script XDE Vignette
PDF R Script XdeParameterClass Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Microarray, Software
Version 2.46.0
In Bioconductor since BioC 2.2 (R-2.7) (15.5 years)
License LGPL-2
Depends R (>= 2.10.0), Biobase(>= 2.5.5)
Imports BiocGenerics, genefilter, graphics, grDevices, gtools, methods, stats, utils, mvtnorm, RColorBrewer, GeneMeta, siggenes
LinkingTo
Suggests MASS, RUnit
SystemRequirements
Enhances coda
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XDE_2.46.0.tar.gz
Windows Binary XDE_2.46.0.zip
macOS Binary (x86_64) XDE_2.46.0.tgz
macOS Binary (arm64) XDE_2.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/XDE
Source Repository (Developer Access) git clone [email protected]:packages/XDE
Bioc Package Browser https://code.bioconductor.org/browse/XDE/
Package Short Url https://bioconductor.org/packages/XDE/
Package Downloads Report Download Stats

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